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本篇文章為大家展示了plink 軟件core dumped報錯怎么辦,內(nèi)容簡明扼要并且容易理解,絕對能使你眼前一亮,通過這篇文章的詳細(xì)介紹希望你能有所收獲。
在使用plink1.9版本時遇到core dumped報錯,運行命令如下:
/share/work/biosoft/plink/plink_v1.9/plink --vcf /share/nas1/wangq/project/pop_test/pop_cucu_demo/work/ann/1.qc_filter/filtered_snp.vcf.gz --make-bed --extract ld.prune.in --out LDfiltered --recode vcf-iid --keep-allele-order --allow-extra-chr --set-missing-var-ids @:#
報錯信息如下:
PLINK v1.90b3.32 64-bit (24 Feb 2016) https://www.cog-genomics.org/plink2 (C) 2005-2016 Shaun Purcell, Christopher Chang GNU General Public License v3 Logging to LDfiltered.log. Options in effect: --allow-extra-chr --extract ld.prune.in --keep-allele-order --make-bed --out LDfiltered --recode vcf-iid --set-missing-var-ids @:# --vcf /share/nas1/wangq/project/pop_test/pop_cucu_demo/work/ann/1.qc_filter/filtered_snp.vcf.gz 128701 MB RAM detected; reserving 64350 MB for main workspace. --vcf: LDfiltered-temporary.bed + LDfiltered-temporary.bim + LDfiltered-temporary.fam written. 9696 variants loaded from .bim file. 9696 missing IDs set. 114 people (0 males, 0 females, 114 ambiguous) loaded from .fam. Ambiguous sex IDs written to LDfiltered.nosex . --extract: 435 variants remaining. Using 1 thread (no multithreaded calculations invoked. Before main variant filters, 114 founders and 0 nonfounders present. Calculating allele frequencies... done. Total genotyping rate is 0.952531. 435 variants and 114 people pass filters and QC. Note: No phenotypes present. --make-bed to LDfiltered.bed + LDfiltered.bim + LDfiltered.fam ... done. --recode vcf-iid to LDfiltered.vcf ... done. Segmentation fault (core dumped)
嘗試各種方法后使用2.0版本plink后沒有再遇到該報錯。
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